Arvados™ Docs
WARNING - you are viewing the documentation for an old version of Arvados. For the latest version, click here.
  1. Welcome
    1. Welcome to Arvados™!
    2. Arvados Community and Getting Help
  2. Walkthough
    1. Processing Whole Genome Sequences
  3. Run a workflow using Workbench
    1. Accessing Arvados Workbench
    2. Running a workflow using Workbench
  4. Working at the Command Line
    1. Getting started at the command line
    2. Getting an API token
    3. Checking your environment
  5. Access an Arvados virtual machine
    1. Accessing an Arvados VM with Webshell
    2. Accessing an Arvados VM with SSH - Unix Environments
    3. Accessing an Arvados VM with SSH - Windows Environments
  6. Working with data sets
    1. Uploading data
    2. Downloading data
    3. Access Keep as a GNU/Linux filesystem
    4. Access Keep from macOS Finder
    5. Access Keep from Windows File Explorer
    6. Trashing and untrashing data
    7. Using arv-copy
    8. Using collection versioning
    9. Using storage classes
  7. Data Analysis with Workflows
    1. Developing CWL Workflows with VSCode
    2. Starting a Workflow at the Command Line
    3. arvados-cwl-runner options
    4. CWL Resources
    5. Working with container images
    6. Guidelines for Writing High-Performance Portable Workflows
    7. Arvados CWL Extensions
    8. Federated Multi-Cluster Workflows
    9. CWL version support
    10. Analyzing workflow performance
    11. Analyzing workflow cost (cloud only)
    12. Debugging workflows - shell access
  8. Working with git repositories
    1. Adding a new Arvados git repository
    2. Working with an Arvados git repository
  9. Reference
    1. Linking alternate login accounts
    2. Arvados SDK Examples
  10. Arvados License
    1. Arvados Free Software Licenses
    2. GNU Affero General Public License
    3. Apache License
    4. Creative Commons

Accessing an Arvados VM with Webshell

This document describes how to access an Arvados VM with Webshell from Workbench.

Access VM using webshell

Webshell gives you access to an arvados virtual machine from your browser with no additional setup.

Note:

Some Arvados clusters may not have webshell set up. If you do not see a “Log in” button or “web shell” column, you will have to follow the Unix or Windows ssh instructions.

In the Arvados Workbench, click on the dropdown menu icon in the upper right corner of the top navigation menu to access the user settings menu, and click on the menu item Virtual machines to see the list of virtual machines you can access. If you do not have access to any virtual machines, please click on Send request for shell access (if present) or contact your system administrator. For the Arvados Playground, this is info@curii.com .

Each row in the Virtual Machines panel lists the hostname of the VM, along with a Log in as *you* button under the column “Web shell”. Clicking on this button will open up a webshell terminal for you in a new browser tab and log you in.

You are now ready to work in your Arvados VM.

Previous: Checking your environment Next: Accessing an Arvados VM with SSH - Unix Environments

The content of this documentation is licensed under the Creative Commons Attribution-Share Alike 3.0 United States licence.
Code samples in this documentation are licensed under the Apache License, Version 2.0.