Arvados™ Docs
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  1. Welcome
    1. Welcome to Arvados™!
    2. Arvados Community and Getting Help
  2. Walkthough
    1. Processing Whole Genome Sequences
  3. Run a workflow using Workbench
    1. Accessing Arvados Workbench
    2. Running a workflow using Workbench
  4. Working at the Command Line
    1. Getting started at the command line
    2. Getting an API token
    3. Checking your environment
  5. Access an Arvados virtual machine
    1. Accessing an Arvados VM with Webshell
    2. Accessing an Arvados VM with SSH - Unix Environments
    3. Accessing an Arvados VM with SSH - Windows Environments
  6. Working with data sets
    1. Uploading data
    2. Downloading data
    3. Access Keep as a GNU/Linux filesystem
    4. Access Keep from macOS Finder
    5. Access Keep from Windows File Explorer
    6. Trashing and untrashing data
    7. Using arv-copy
    8. Using collection versioning
    9. Using storage classes
  7. Data Analysis with Workflows
    1. Developing CWL Workflows with VSCode
    2. Starting a Workflow at the Command Line
    3. arvados-cwl-runner options
    4. CWL Resources
    5. Working with container images
    6. Guidelines for Writing High-Performance Portable Workflows
    7. Arvados CWL Extensions
    8. Federated Multi-Cluster Workflows
    9. CWL version support
    10. Analyzing workflow performance
    11. Analyzing workflow cost (cloud only)
    12. Debugging workflows - shell access
  8. Working with git repositories
    1. Adding a new Arvados git repository
    2. Working with an Arvados git repository
  9. Reference
    1. Linking alternate login accounts
    2. Arvados SDK Examples
  10. Arvados License
    1. Arvados Free Software Licenses
    2. GNU Affero General Public License
    3. Apache License
    4. Creative Commons

Arvados SDK Examples

Code snippets for perform various tasks with the API are documented in the SDK section .

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The content of this documentation is licensed under the Creative Commons Attribution-Share Alike 3.0 United States licence.
Code samples in this documentation are licensed under the Apache License, Version 2.0.