Arvados™ Docs
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  1. Welcome
    1. Welcome to Arvados™!
    2. Arvados Community and Getting Help
  2. Run a workflow using Workbench
    1. Accessing Arvados Workbench
    2. Running a workflow using Workbench
    3. Create a Workflow with Composer
  3. Access an Arvados virtual machine
    1. Accessing an Arvados VM with Webshell
    2. Accessing an Arvados VM with SSH - Unix Environments
    3. Accessing an Arvados VM with SSH - Windows Environments
    4. Checking your environment
    5. Getting an API token
  4. Working with data sets
    1. Uploading data
    2. Downloading data
    3. Accessing Keep from GNU/Linux
    4. Accessing Keep from OS X
    5. Accessing Keep from Windows
    6. How Keep works
    7. Keep collection lifecycle
    8. Using arv-copy
    9. Using storage classes
    10. Using collection versioning
  5. Running workflows at the command line
    1. Running an Arvados workflow
    2. Using arvados-cwl-runner
  6. Working with git repositories
    1. Adding a new Arvados git repository
    2. Working with an Arvados git repository
  7. Develop an Arvados workflow
    1. Introduction to Crunch
    2. Writing a CWL workflow
    3. Federated Multi-Cluster Workflows
    4. Best Practices for writing CWL
    5. Arvados CWL Extensions
    6. Customizing Crunch environment using Docker
  8. Reference
    1. Linking alternate login accounts
    2. Arvados SDK Examples
  9. Arvados License
    1. Arvados Free Software Licenses
    2. GNU Affero General Public License
    3. Apache License
    4. Creative Commons
  10. Obsolete documentation
    1. Running an Arvados pipeline
    2. Using arv-run
    3. Writing a pipeline template
    4. Tools for writing Crunch pipelines
    5. Writing a Crunch script
    6. Running on an Arvados cluster
    7. Concurrent Crunch tasks
    8. run-command reference
    9. Pipeline template reference
    10. Scripts provided by Arvados
    11. Querying the Metadata Database

Arvados Community and Getting Help

On the web

The Arvados Free Sofware project page is located at https://arvados.org . The Arvados Wiki is a collaborative site for documenting Arvados and provides an overview of the Arvados Platform and Components. The Arvados blog posts articles of interest about Arvados.

Mailing lists

The Arvados user mailing list is a forum for general discussion, questions, and news about Arvados development. The Arvados developer mailing list is a forum for more technical discussion, intended for developers and contributers to Arvados.

IRC

The #arvados IRC (Internet Relay Chat) channel at the Open and Free Technology Community is available for live discussion and support. You can use a traditional IRC client or join OFTC over the web.

Bug tracking

If you think you have found a bug, or would like to make a feature request, check the Arvados issue tracker to see if has already been reported or add a new issue.

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The content of this documentation is licensed under the Creative Commons Attribution-Share Alike 3.0 United States licence.
Code samples in this documentation are licensed under the Apache License, Version 2.0.