Arvados™ Docs
  1. Welcome
    1. Welcome to Arvados™!
    2. Arvados Community and Getting Help
  2. Walkthough
    1. Accessing Arvados Workbench
    2. Processing Whole Genome Sequences
  3. Working at the Command Line
    1. Getting started at the command line
    2. Getting an API token
    3. Checking your environment
  4. Working with data sets
    1. Organizing data
    2. Uploading data
    3. Downloading data
    4. Trashing and untrashing data
    5. Using arv-copy
    6. Access Keep as a GNU/Linux filesystem
    7. Access Keep from macOS Finder
    8. Access Keep from Windows File Explorer
    9. Using collection versioning
    10. Using storage classes
  5. Data Analysis with Workflows
    1. Running a workflow using Workbench
    2. Starting a workflow at the command line
    3. Analyzing workflow performance
    4. Debugging workflows - shell access
    5. Using external data sources in workflows
    6. Running web services in Arvados containers
    7. Analyzing workflow cost (cloud only)
    8. Federated Multi-Cluster Workflows
    9. arvados-cwl-runner options
  6. Common Workflow Language
    1. Getting Started with CWL
    2. Developing CWL Workflows with VSCode
    3. Working with container images
    4. Guidelines for Writing High-Performance Portable Workflows
    5. CWL Resources
    6. Arvados CWL Extensions
    7. CWL version support
  7. Access an Arvados virtual machine
    1. Accessing an Arvados VM with Webshell
    2. Accessing an Arvados VM with SSH - Unix Environments
    3. Accessing an Arvados VM with SSH - Windows Environments
  8. Reference
    1. Workbench 2 migration
    2. Linking alternate login accounts
    3. Arvados SDK Examples
  9. Arvados License
    1. Arvados Free Software Licenses
    2. GNU Affero General Public License
    3. Apache License
    4. Creative Commons

Arvados Community and Getting Help

On the web

The Arvados Free Sofware project page is located at https://arvados.org. The Arvados GitHub project is a collaborative site for improving Arvados.

Chat

The arvados/community channel at gitter.im is available for live discussion and support.

Bug tracking

If you think you have found a bug, or would like to make a feature request, check the Arvados issue tracker to see if has already been reported or add a new issue.

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The content of this documentation is licensed under the Creative Commons Attribution-Share Alike 3.0 United States licence.
Code samples in this documentation are licensed under the Apache License, Version 2.0.