In order to use the arv command, make sure that you have a working environment.
arv create can be used to create Arvados objects from the command line. Arv create opens up the editor of your choice (set the EDITOR environment variable) and allows you to type or paste a json or yaml description. When saved the object will be created on the API server, if it passes validation.
$ arv create --help
Options:
--project-uuid, -p <s>: Project uuid in which to create the object
--help, -h: Show this message
arv get can be used to get a textual representation of Arvados objects from the command line. The output can be limited to a subset of the object’s fields. This command can be used with only the knowledge of an object’s UUID.
$ arv get --help
Usage: arv [--format json|yaml] get [uuid] [fields...]
Fetch the specified Arvados object, select the specified fields,
and print a text representation.
arv edit can be used to edit Arvados objects from the command line. Arv edit opens up the editor of your choice (set the EDITOR environment variable) with the json or yaml description of the object. Saving the file will update the Arvados object on the API server, if it passes validation.
$ arv edit --help
Arvados command line client
Usage: arv edit [uuid] [fields...]
Fetch the specified Arvados object, select the specified fields,
open an interactive text editor on a text representation (json or
yaml, use --format) and then update the object. Will use 'nano'
by default, customize with the EDITOR or VISUAL environment variable.
arv copy can be used to copy a pipeline instance, template or collection from one Arvados instance to another. It takes care of copying the object and all its dependencies.
$ arv copy --help
usage: arv_copy.py [-h] [-v] [--progress] [--no-progress] [-f] --src
SOURCE_ARVADOS --dst DESTINATION_ARVADOS [--recursive]
[--no-recursive] [--dst-git-repo DST_GIT_REPO]
[--project-uuid PROJECT_UUID] [--retries RETRIES]
object_uuid
Copy a pipeline instance, template or collection from one Arvados instance to
another.
positional arguments:
object_uuid The UUID of the object to be copied.
optional arguments:
-h, --help show this help message and exit
-v, --verbose Verbose output.
--progress Report progress on copying collections. (default)
--no-progress Do not report progress on copying collections.
-f, --force Perform copy even if the object appears to exist at
the remote destination.
--src SOURCE_ARVADOS The name of the source Arvados instance (required) -
points at an Arvados config file. May be either a
pathname to a config file, or (for example) "foo" as
shorthand for $HOME/.config/arvados/foo.conf.
--dst DESTINATION_ARVADOS
The name of the destination Arvados instance
(required) - points at an Arvados config file. May be
either a pathname to a config file, or (for example)
"foo" as shorthand for $HOME/.config/arvados/foo.conf.
--recursive Recursively copy any dependencies for this object.
(default)
--no-recursive Do not copy any dependencies. NOTE: if this option is
given, the copied object will need to be updated
manually in order to be functional.
--dst-git-repo DST_GIT_REPO
The name of the destination git repository. Required
when copying a pipeline recursively.
--project-uuid PROJECT_UUID
The UUID of the project at the destination to which
the pipeline should be copied.
--retries RETRIES Maximum number of times to retry server requests that
encounter temporary failures (e.g., server down).
Default 3.
arv tag is used to tag Arvados objects.
$ arv tag --help
Usage:
arv tag add tag1 [tag2 ...] --object object_uuid1 [object_uuid2...]
arv tag remove tag1 [tag2 ...] --object object_uuid1 [object_uuid2...]
arv tag remove --all
--dry-run, -n: Don't actually do anything
--verbose, -v: Print some things on stderr
--uuid, -u: Return the UUIDs of the objects in the response, one per
line (default)
--json, -j: Return the entire response received from the API server, as
a JSON object
--human, -h: Return the response received from the API server, as a JSON
object with whitespace added for human consumption
--pretty, -p: Synonym of --human
--yaml, -y: Return the response received from the API server, in YAML
format
--help, -e: Show this message
This is a frontend to arv-ws.
arv ws provides access to the websockets event stream.
$ arv ws --help
usage: arv-ws [-h] [-u UUID] [-f FILTERS]
[--poll-interval POLL_INTERVAL | --no-poll]
[-p PIPELINE | -j JOB]
optional arguments:
-h, --help show this help message and exit
-u UUID, --uuid UUID Filter events on object_uuid
-f FILTERS, --filters FILTERS
Arvados query filter to apply to log events (JSON
encoded)
--poll-interval POLL_INTERVAL
If websockets is not available, specify the polling
interval, default is every 15 seconds
--no-poll Do not poll if websockets are not available, just fail
-p PIPELINE, --pipeline PIPELINE
Supply pipeline uuid, print log output from pipeline
and its jobs
-j JOB, --job JOB Supply job uuid, print log output from jobs
arv keep commands for accessing the Keep storage service.
$ arv keep --help
Usage: arv keep [method] [--parameters]
Use 'arv keep [method] --help' to get more information about specific methods.
Available methods: ls, get, put, docker
This is a frontend to arv-ls.
$ arv keep ls --help
usage: arv-ls [-h] [--retries RETRIES] [-s] locator
List contents of a manifest
positional arguments:
locator Collection UUID or locator
optional arguments:
-h, --help show this help message and exit
--retries RETRIES Maximum number of times to retry server requests that
encounter temporary failures (e.g., server down). Default
3.
-s List file sizes, in KiB.
This is a frontend to arv-get.
$ arv keep get --help
usage: arv-get [-h] [--retries RETRIES] [--version]
[--progress | --no-progress | --batch-progress]
[--hash HASH | --md5sum] [-n] [-r]
[-f | -v | --skip-existing | --strip-manifest] [--threads N]
locator [destination]
Copy data from Keep to a local file or pipe.
positional arguments:
locator Collection locator, optionally with a file path or
prefix.
destination Local file or directory where the data is to be written.
Default: stdout.
optional arguments:
-h, --help show this help message and exit
--retries RETRIES Maximum number of times to retry server requests that
encounter temporary failures (e.g., server down).
Default 3.
--version Print version and exit.
--progress Display human-readable progress on stderr (bytes and, if
possible, percentage of total data size). This is the
default behavior when it is not expected to interfere
with the output: specifically, stderr is a tty _and_
either stdout is not a tty, or output is being written
to named files rather than stdout.
--no-progress Do not display human-readable progress on stderr.
--batch-progress Display machine-readable progress on stderr (bytes and,
if known, total data size).
--hash HASH Display the hash of each file as it is read from Keep,
using the given hash algorithm. Supported algorithms
include md5, sha1, sha224, sha256, sha384, and sha512.
--md5sum Display the MD5 hash of each file as it is read from
Keep.
-n Do not write any data -- just read from Keep, and report
md5sums if requested.
-r Retrieve all files in the specified collection/prefix.
This is the default behavior if the "locator" argument
ends with a forward slash.
-f Overwrite existing files while writing. The default
behavior is to refuse to write *anything* if any of the
output files already exist. As a special case, -f is not
needed to write to stdout.
-v Once for verbose mode, twice for debug mode.
--skip-existing Skip files that already exist. The default behavior is
to refuse to write *anything* if any files exist that
would have to be overwritten. This option causes even
devices, sockets, and fifos to be skipped.
--strip-manifest When getting a collection manifest, strip its access
tokens before writing it.
--threads N Set the number of download threads to be used. Take into
account that using lots of threads will increase the RAM
requirements. Default is to use 4 threads. On high
latency installations, using a greater number will
improve overall throughput.
This is a frontend to arv-put.
$ arv keep put --help
usage: arv-put [-h] [--max-manifest-depth N | --normalize]
[--as-stream | --stream | --as-manifest | --in-manifest | --manifest | --as-raw | --raw]
[--use-filename FILENAME] [--filename FILENAME]
[--portable-data-hash] [--replication N]
[--project-uuid UUID] [--name NAME]
[--progress | --no-progress | --batch-progress]
[--resume | --no-resume] [--retries RETRIES]
[path [path ...]]
Copy data from the local filesystem to Keep.
positional arguments:
path Local file or directory. Default: read from standard
input.
optional arguments:
-h, --help show this help message and exit
--max-manifest-depth N
Maximum depth of directory tree to represent in the
manifest structure. A directory structure deeper than
this will be represented as a single stream in the
manifest. If N=0, the manifest will contain a single
stream. Default: -1 (unlimited), i.e., exactly one
manifest stream per filesystem directory that contains
files.
--normalize Normalize the manifest by re-ordering files and
streams after writing data.
--as-stream Synonym for --stream.
--stream Store the file content and display the resulting
manifest on stdout. Do not write the manifest to Keep
or save a Collection object in Arvados.
--as-manifest Synonym for --manifest.
--in-manifest Synonym for --manifest.
--manifest Store the file data and resulting manifest in Keep,
save a Collection object in Arvados, and display the
manifest locator (Collection uuid) on stdout. This is
the default behavior.
--as-raw Synonym for --raw.
--raw Store the file content and display the data block
locators on stdout, separated by commas, with a
trailing newline. Do not store a manifest.
--use-filename FILENAME
Synonym for --filename.
--filename FILENAME Use the given filename in the manifest, instead of the
name of the local file. This is useful when "-" or
"/dev/stdin" is given as an input file. It can be used
only if there is exactly one path given and it is not
a directory. Implies --manifest.
--portable-data-hash Print the portable data hash instead of the Arvados
UUID for the collection created by the upload.
--replication N Set the replication level for the new collection: how
many different physical storage devices (e.g., disks)
should have a copy of each data block. Default is to
use the server-provided default (if any) or 2.
--project-uuid UUID Store the collection in the specified project, instead
of your Home project.
--name NAME Save the collection with the specified name.
--progress Display human-readable progress on stderr (bytes and,
if possible, percentage of total data size). This is
the default behavior when stderr is a tty.
--no-progress Do not display human-readable progress on stderr, even
if stderr is a tty.
--batch-progress Display machine-readable progress on stderr (bytes
and, if known, total data size).
--resume Continue interrupted uploads from cached state
(default).
--no-resume Do not continue interrupted uploads from cached state.
--retries RETRIES Maximum number of times to retry server requests that
encounter temporary failures (e.g., server down).
Default 3.
The content of this documentation is licensed under the
Creative
Commons Attribution-Share Alike 3.0 United States licence.
Code samples in this documentation are licensed under the
Apache License, Version 2.0.