A B C D E F G H I J K L M N O P Q R S T U V W X
All Classes All Packages

A

accessible() - Method in class org.arvados.client.api.client.KeepServicesApiClient

addFileReplacement(String, String) - Method in class org.arvados.client.api.model.CollectionReplaceFiles

ApiError - Class in org.arvados.client.api.model

ApiError() - Constructor for class org.arvados.client.api.model.ApiError

apiHost(String) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

apiHostInsecure(boolean) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

apiPort(int) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

apiProtocol(String) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

apiToken(String) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

Argument - Class in org.arvados.client.api.model.argument

Argument() - Constructor for class org.arvados.client.api.model.argument.Argument

ArvadosApiException - Exception in org.arvados.client.exception

ArvadosApiException(String) - Constructor for exception org.arvados.client.exception.ArvadosApiException

ArvadosApiException(String, Throwable) - Constructor for exception org.arvados.client.exception.ArvadosApiException

ArvadosApiException(Throwable) - Constructor for exception org.arvados.client.exception.ArvadosApiException

ArvadosClientException - Exception in org.arvados.client.exception

Parent exception for all exceptions in library.

ArvadosClientException(String) - Constructor for exception org.arvados.client.exception.ArvadosClientException

ArvadosClientException(String, Throwable) - Constructor for exception org.arvados.client.exception.ArvadosClientException

ArvadosClientException(Throwable) - Constructor for exception org.arvados.client.exception.ArvadosClientException

ArvadosFacade - Class in org.arvados.client.facade

ArvadosFacade() - Constructor for class org.arvados.client.facade.ArvadosFacade

ArvadosFacade(ConfigProvider) - Constructor for class org.arvados.client.facade.ArvadosFacade

B

BaseStandardApiClient<T extends Item,L extends ItemList> - Class in org.arvados.client.api.client

build() - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

build() - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

build() - Method in class org.arvados.client.logic.collection.CollectionFactory.CollectionFactoryBuilder

build() - Method in class org.arvados.client.logic.collection.ManifestFactory.ManifestFactoryBuilder

builder() - Static method in class org.arvados.client.api.model.argument.ListArgument

builder() - Static method in class org.arvados.client.config.ExternalConfigProvider

builder() - Static method in class org.arvados.client.logic.collection.CollectionFactory

builder() - Static method in class org.arvados.client.logic.collection.ManifestFactory

C

Characters - Class in org.arvados.client.common

Collection - Class in org.arvados.client.api.model

Collection() - Constructor for class org.arvados.client.api.model.Collection

CollectionFactory - Class in org.arvados.client.logic.collection

CollectionFactory.CollectionFactoryBuilder - Class in org.arvados.client.logic.collection

CollectionList - Class in org.arvados.client.api.model

CollectionList() - Constructor for class org.arvados.client.api.model.CollectionList

CollectionOptions() - Constructor for class org.arvados.client.api.model.CollectionReplaceFiles.CollectionOptions

CollectionReplaceFiles - Class in org.arvados.client.api.model

CollectionReplaceFiles() - Constructor for class org.arvados.client.api.model.CollectionReplaceFiles

CollectionReplaceFiles.CollectionOptions - Class in org.arvados.client.api.model

CollectionsApiClient - Class in org.arvados.client.api.client

CollectionsApiClient(ConfigProvider) - Constructor for class org.arvados.client.api.client.CollectionsApiClient

COLON - Static variable in class org.arvados.client.common.Characters

config(ConfigProvider) - Method in class org.arvados.client.logic.collection.CollectionFactory.CollectionFactoryBuilder

ConfigProvider - Interface in org.arvados.client.config

connectTimeout(int) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

contentLength() - Method in class org.arvados.client.api.client.CountingFileRequestBody

contentLength() - Method in class org.arvados.client.api.client.CountingStreamRequestBody

contents(ContentsGroup) - Method in class org.arvados.client.api.client.GroupsApiClient

contents(ListArgument) - Method in class org.arvados.client.api.client.GroupsApiClient

ContentsGroup - Class in org.arvados.client.api.model.argument

ContentsGroup() - Constructor for class org.arvados.client.api.model.argument.ContentsGroup

count(ListArgument.Count) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

CountingFileRequestBody - Class in org.arvados.client.api.client

Based on: https://gist.github.com/eduardb/dd2dc530afd37108e1ac

CountingStreamRequestBody - Class in org.arvados.client.api.client

create() - Method in class org.arvados.client.logic.collection.CollectionFactory

create() - Method in class org.arvados.client.logic.collection.ManifestFactory

create(boolean) - Method in class org.arvados.client.api.client.factory.OkHttpClientFactory

create(Collection) - Method in class org.arvados.client.api.client.CollectionsApiClient

create(T) - Method in class org.arvados.client.api.client.BaseStandardApiClient

createEmptyCollection(String, String) - Method in class org.arvados.client.facade.ArvadosFacade

Creates and uploads new empty collection to specified project.

createNewProject(String) - Method in class org.arvados.client.facade.ArvadosFacade

Creates new project that will be a subproject of "home" for current user.

createNewSubProject(String, String) - Method in class org.arvados.client.facade.ArvadosFacade

Creates new project that will be a subproject of "home" for the specified owner.

current() - Method in class org.arvados.client.api.client.UsersApiClient

D

decode(String) - Method in class org.arvados.client.logic.collection.ManifestDecoder

delete(String) - Method in class org.arvados.client.api.client.BaseStandardApiClient

delete(String, String) - Method in class org.arvados.client.api.client.KeepWebApiClient

deleteCollection(String) - Method in class org.arvados.client.facade.ArvadosFacade

Deletes collection with specified uuid.

distinct(Boolean) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

DOT - Static variable in class org.arvados.client.common.Characters

download(String) - Method in class org.arvados.client.api.client.KeepServerApiClient

download(String, String) - Method in class org.arvados.client.api.client.KeepWebApiClient

downloadCollectionFiles(String, String, boolean) - Method in class org.arvados.client.facade.ArvadosFacade

This method downloads all files from collection.

downloadFile(String, String, String) - Method in class org.arvados.client.facade.ArvadosFacade

This method downloads single file from collection using Arvados Keep-Web.

downloadFilesFromCollection(String, String) - Method in class org.arvados.client.logic.keep.FileDownloader

downloadFilesFromCollectionUsingKeepWeb(String, String) - Method in class org.arvados.client.logic.keep.FileDownloader

downloadFileWithResume(String, String, String, long, Long) - Method in class org.arvados.client.logic.keep.FileDownloader

DownloadFolderAlreadyExistsException - Exception in org.arvados.client.logic.keep.exception

Exception indicating that directory with given name was already created in specified location.

DownloadFolderAlreadyExistsException(String) - Constructor for exception org.arvados.client.logic.keep.exception.DownloadFolderAlreadyExistsException

downloadSingleFileUsingKeepWeb(String, String, String) - Method in class org.arvados.client.logic.keep.FileDownloader

E

equals(Object) - Method in class org.arvados.client.api.model.argument.Filter

EQUALS - org.arvados.client.api.model.argument.Filter.Operator

EXACT - org.arvados.client.api.model.argument.ListArgument.Count

excludeHomeProject(Boolean) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

EXISTS - org.arvados.client.api.model.argument.Filter.Operator

ExternalConfigProvider - Class in org.arvados.client.config

ExternalConfigProvider.ExternalConfigProviderBuilder - Class in org.arvados.client.config

F

FILE_TOKEN_PATTERN - Static variable in class org.arvados.client.common.Patterns

FileAlreadyExistsException - Exception in org.arvados.client.logic.keep.exception

Signals that an attempt to download a file with given name has failed for a specified download location.

FileAlreadyExistsException(String) - Constructor for exception org.arvados.client.logic.keep.exception.FileAlreadyExistsException

FileConfigProvider - Class in org.arvados.client.config

FileConfigProvider() - Constructor for class org.arvados.client.config.FileConfigProvider

FileConfigProvider(String) - Constructor for class org.arvados.client.config.FileConfigProvider

FileDownloader - Class in org.arvados.client.logic.keep

FileDownloader(KeepClient, ManifestDecoder, CollectionsApiClient, KeepWebApiClient) - Constructor for class org.arvados.client.logic.keep.FileDownloader

FileMerge - Class in org.arvados.client.utils

FileMerge() - Constructor for class org.arvados.client.utils.FileMerge

files(Collection<File>) - Method in class org.arvados.client.logic.collection.ManifestFactory.ManifestFactoryBuilder

FileSplit - Class in org.arvados.client.utils

Based on: https://stackoverflow.com/questions/10864317/how-to-break-a-file-into-pieces-using-java

FileSplit() - Constructor for class org.arvados.client.utils.FileSplit

fileSplitDirectory(File) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

fileSplitSize(int) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

FileToken - Class in org.arvados.client.logic.collection

FileToken(String) - Constructor for class org.arvados.client.logic.collection.FileToken

FileToken(String, String) - Constructor for class org.arvados.client.logic.collection.FileToken

FileTransferHandler - Class in org.arvados.client.logic.keep

FileTransferHandler(String, Map<String, String>, ConfigProvider) - Constructor for class org.arvados.client.logic.keep.FileTransferHandler

FileUploader - Class in org.arvados.client.logic.keep

FileUploader(KeepClient, CollectionsApiClient, ConfigProvider) - Constructor for class org.arvados.client.logic.keep.FileUploader

Filter - Class in org.arvados.client.api.model.argument

Filter.Operator - Enum in org.arvados.client.api.model.argument

filters(List<Filter>) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

G

get(String) - Method in class org.arvados.client.api.client.BaseStandardApiClient

get(String, String) - Method in class org.arvados.client.logic.keep.FileTransferHandler

get(String, String, long, Long) - Method in class org.arvados.client.api.client.KeepWebApiClient

get(KeepLocator) - Method in class org.arvados.client.logic.keep.FileTransferHandler

getApi() - Method in class org.arvados.client.api.model.RuntimeConstraints

getApiHost() - Method in interface org.arvados.client.config.ConfigProvider

getApiHost() - Method in class org.arvados.client.config.ExternalConfigProvider

getApiHost() - Method in class org.arvados.client.config.FileConfigProvider

getApiPort() - Method in interface org.arvados.client.config.ConfigProvider

getApiPort() - Method in class org.arvados.client.config.ExternalConfigProvider

getApiPort() - Method in class org.arvados.client.config.FileConfigProvider

getApiProtocol() - Method in interface org.arvados.client.config.ConfigProvider

getApiProtocol() - Method in class org.arvados.client.config.ExternalConfigProvider

getApiProtocol() - Method in class org.arvados.client.config.FileConfigProvider

getApiToken() - Method in interface org.arvados.client.config.ConfigProvider

getApiToken() - Method in class org.arvados.client.config.ExternalConfigProvider

getApiToken() - Method in class org.arvados.client.config.FileConfigProvider

getAttribute() - Method in class org.arvados.client.api.model.argument.Filter

getCollectionOptions() - Method in class org.arvados.client.api.model.CollectionReplaceFiles

getCollectionsFromProjectByName(String, String) - Method in class org.arvados.client.facade.ArvadosFacade

Filters all collections from selected project and returns list of those that contain passed String in their name.

getCommand() - Method in class org.arvados.client.api.model.Group

getConfig() - Method in class org.arvados.client.config.FileConfigProvider

getConnectTimeout() - Method in interface org.arvados.client.config.ConfigProvider

getConnectTimeout() - Method in class org.arvados.client.config.ExternalConfigProvider

getConnectTimeout() - Method in class org.arvados.client.config.FileConfigProvider

getContainerCount() - Method in class org.arvados.client.api.model.Group

getContainerCountMax() - Method in class org.arvados.client.api.model.Group

getContainerImage() - Method in class org.arvados.client.api.model.Group

getContainerUuid() - Method in class org.arvados.client.api.model.Group

getCreatedAt() - Method in class org.arvados.client.api.model.Item

getCurrentUser() - Method in class org.arvados.client.facade.ArvadosFacade

Returns current user information based on Api Token provided via configuration

getCwd() - Method in class org.arvados.client.api.model.Group

getDataChunk(KeepLocator) - Method in class org.arvados.client.logic.keep.KeepClient

getDefaultClient() - Method in class org.arvados.client.api.client.factory.OkHttpClientFactory

getDefaultClientBuilder() - Method in class org.arvados.client.api.client.factory.OkHttpClientFactory

getDefaultUnsecureClient() - Method in class org.arvados.client.api.client.factory.OkHttpClientFactory

getDefaultUnsecureClientBuilder() - Method in class org.arvados.client.api.client.factory.OkHttpClientFactory

getDeleteAt() - Method in class org.arvados.client.api.model.Collection

getDeleteAt() - Method in class org.arvados.client.api.model.Group

getDescription() - Method in class org.arvados.client.api.model.Collection

getDescription() - Method in class org.arvados.client.api.model.Group

getDesiredProjectUuid(String) - Method in class org.arvados.client.logic.collection.CollectionFactory

getEmail() - Method in class org.arvados.client.api.model.User

getEnsureUniqueName() - Method in class org.arvados.client.api.model.argument.UntrashGroup

getEnvironment() - Method in class org.arvados.client.api.model.Group

getErrors() - Method in class org.arvados.client.api.model.ApiError

getErrorToken() - Method in class org.arvados.client.api.model.ApiError

getEtag() - Method in class org.arvados.client.api.model.Item

getEtag() - Method in class org.arvados.client.api.model.ItemList

getExpiresAt() - Method in class org.arvados.client.api.model.Group

getFileName() - Method in class org.arvados.client.logic.collection.FileToken

getFilePosition() - Method in class org.arvados.client.logic.collection.FileToken

getFileSize() - Method in class org.arvados.client.logic.collection.FileToken

getFileSplitDirectory() - Method in interface org.arvados.client.config.ConfigProvider

getFileSplitDirectory() - Method in class org.arvados.client.config.ExternalConfigProvider

getFileSplitDirectory() - Method in class org.arvados.client.config.FileConfigProvider

getFileSplitSize() - Method in interface org.arvados.client.config.ConfigProvider

getFileSplitSize() - Method in class org.arvados.client.config.ExternalConfigProvider

getFileSplitSize() - Method in class org.arvados.client.config.FileConfigProvider

getFileTokens() - Method in class org.arvados.client.logic.collection.ManifestStream

getFilters() - Method in class org.arvados.client.api.model.argument.ContentsGroup

getFilters() - Method in class org.arvados.client.api.model.Group

getFirstName() - Method in class org.arvados.client.api.model.User

getFullName() - Method in class org.arvados.client.api.model.User

getFullPath() - Method in class org.arvados.client.logic.collection.FileToken

getGroupClass() - Method in class org.arvados.client.api.model.Group

getHeadKind() - Method in class org.arvados.client.api.model.Link

getHeadUuid() - Method in class org.arvados.client.api.model.Link

getHints() - Method in class org.arvados.client.logic.keep.KeepLocator

getIdentityUrl() - Method in class org.arvados.client.api.model.User

getIntegrationTestProjectUuid() - Method in class org.arvados.client.config.FileConfigProvider

getIsActive() - Method in class org.arvados.client.api.model.User

getIsAdmin() - Method in class org.arvados.client.api.model.User

getIsInvited() - Method in class org.arvados.client.api.model.User

getIsTrashed() - Method in class org.arvados.client.api.model.Group

getItems() - Method in class org.arvados.client.api.model.CollectionList

getItems() - Method in class org.arvados.client.api.model.GroupList

getItems() - Method in class org.arvados.client.api.model.KeepServiceList

getItems() - Method in class org.arvados.client.api.model.LinkList

getItems() - Method in class org.arvados.client.api.model.UserList

getItemsAvailable() - Method in class org.arvados.client.api.model.ItemList

getKeepCacheRam() - Method in class org.arvados.client.api.model.RuntimeConstraints

getKeepLocators() - Method in class org.arvados.client.logic.collection.ManifestStream

getKeepWebHost() - Method in interface org.arvados.client.config.ConfigProvider

getKeepWebHost() - Method in class org.arvados.client.config.ExternalConfigProvider

getKeepWebHost() - Method in class org.arvados.client.config.FileConfigProvider

getKeepWebPort() - Method in interface org.arvados.client.config.ConfigProvider

getKeepWebPort() - Method in class org.arvados.client.config.ExternalConfigProvider

getKeepWebPort() - Method in class org.arvados.client.config.FileConfigProvider

getKind() - Method in class org.arvados.client.api.model.Item

getKind() - Method in class org.arvados.client.api.model.ItemList

getLastName() - Method in class org.arvados.client.api.model.User

getLimit() - Method in class org.arvados.client.api.model.argument.ContentsGroup

getLimit() - Method in class org.arvados.client.api.model.ItemList

getLinkClass() - Method in class org.arvados.client.api.model.Link

getLogUuid() - Method in class org.arvados.client.api.model.Group

getManifestText() - Method in class org.arvados.client.api.model.Collection

getMd5sum() - Method in class org.arvados.client.logic.keep.KeepLocator

getModifiedAt() - Method in class org.arvados.client.api.model.Item

getModifiedByClientUuid() - Method in class org.arvados.client.api.model.Item

getModifiedByUserUuid() - Method in class org.arvados.client.api.model.Item

getMounts() - Method in class org.arvados.client.api.model.Group

getName() - Method in class org.arvados.client.api.model.Collection

getName() - Method in class org.arvados.client.api.model.Group

getName() - Method in class org.arvados.client.api.model.Link

getNumberOfCopies() - Method in interface org.arvados.client.config.ConfigProvider

getNumberOfCopies() - Method in class org.arvados.client.config.ExternalConfigProvider

getNumberOfCopies() - Method in class org.arvados.client.config.FileConfigProvider

getNumberOfRetries() - Method in interface org.arvados.client.config.ConfigProvider

getNumberOfRetries() - Method in class org.arvados.client.config.ExternalConfigProvider

getNumberOfRetries() - Method in class org.arvados.client.config.FileConfigProvider

getOffset() - Method in class org.arvados.client.api.model.ItemList

getOperand() - Method in class org.arvados.client.api.model.argument.Filter

getOperator() - Method in class org.arvados.client.api.model.argument.Filter

getOrder() - Method in class org.arvados.client.api.model.argument.ContentsGroup

getOutputName() - Method in class org.arvados.client.api.model.Group

getOutputPath() - Method in class org.arvados.client.api.model.Group

getOutputTtl() - Method in class org.arvados.client.api.model.Group

getOutputUuid() - Method in class org.arvados.client.api.model.Group

getOwnerUuid() - Method in class org.arvados.client.api.model.Item

getPath() - Method in class org.arvados.client.logic.collection.FileToken

getPortableDataHash() - Method in class org.arvados.client.api.model.Collection

getPrefs() - Method in class org.arvados.client.api.model.User

getPriority() - Method in class org.arvados.client.api.model.Group

getProjectByUuid(String) - Method in class org.arvados.client.facade.ArvadosFacade

Gets project details by uuid.

getProperties() - Method in class org.arvados.client.api.model.Collection

getProperties() - Method in class org.arvados.client.api.model.Group

getRam() - Method in class org.arvados.client.api.model.RuntimeConstraints

getReadOnly() - Method in class org.arvados.client.api.model.KeepService

getReadTimeout() - Method in interface org.arvados.client.config.ConfigProvider

getReadTimeout() - Method in class org.arvados.client.config.ExternalConfigProvider

getReadTimeout() - Method in class org.arvados.client.config.FileConfigProvider

getRecursive() - Method in class org.arvados.client.api.model.argument.ContentsGroup

getReplaceFiles() - Method in class org.arvados.client.api.model.CollectionReplaceFiles

getReplicationConfirmed() - Method in class org.arvados.client.api.model.Collection

getReplicationConfirmedAt() - Method in class org.arvados.client.api.model.Collection

getReplicationDesired() - Method in class org.arvados.client.api.model.Collection

getRequestingContainerUuid() - Method in class org.arvados.client.api.model.Group

getRuntimeConstraints() - Method in class org.arvados.client.api.model.Group

getSchedulingParameters() - Method in class org.arvados.client.api.model.Group

getServiceHost() - Method in class org.arvados.client.api.model.KeepService

getServicePort() - Method in class org.arvados.client.api.model.KeepService

getServiceRoot() - Method in class org.arvados.client.api.model.KeepService

getServiceSslFlag() - Method in class org.arvados.client.api.model.KeepService

getServiceType() - Method in class org.arvados.client.api.model.KeepService

getState() - Method in class org.arvados.client.api.model.Group

getStreamName() - Method in class org.arvados.client.logic.collection.ManifestStream

getTailKind() - Method in class org.arvados.client.api.model.Link

getTailUuid() - Method in class org.arvados.client.api.model.Link

getTrashAt() - Method in class org.arvados.client.api.model.Collection

getTrashAt() - Method in class org.arvados.client.api.model.Group

getTrashed() - Method in class org.arvados.client.api.model.Collection

getUpdatedAt() - Method in class org.arvados.client.api.model.Item

getUseExisting() - Method in class org.arvados.client.api.model.Group

getUsername() - Method in class org.arvados.client.api.model.User

getUuid() - Method in class org.arvados.client.api.model.argument.Argument

getUuid() - Method in class org.arvados.client.api.model.Item

getVcpus() - Method in class org.arvados.client.api.model.RuntimeConstraints

getWritableBy() - Method in class org.arvados.client.api.model.Group

getWritableBy() - Method in class org.arvados.client.api.model.User

getWriteTimeout() - Method in interface org.arvados.client.config.ConfigProvider

getWriteTimeout() - Method in class org.arvados.client.config.ExternalConfigProvider

getWriteTimeout() - Method in class org.arvados.client.config.FileConfigProvider

Group - Class in org.arvados.client.api.model

Group() - Constructor for class org.arvados.client.api.model.Group

GROUP_UUID_PATTERN - Static variable in class org.arvados.client.common.Patterns

GroupList - Class in org.arvados.client.api.model

GroupList() - Constructor for class org.arvados.client.api.model.GroupList

GroupsApiClient - Class in org.arvados.client.api.client

GroupsApiClient(ConfigProvider) - Constructor for class org.arvados.client.api.client.GroupsApiClient

H

hashCode() - Method in class org.arvados.client.api.model.argument.Filter

Headers - Class in org.arvados.client.common

HINT_PATTERN - Static variable in class org.arvados.client.common.Patterns

I

ILIKE - org.arvados.client.api.model.argument.Filter.Operator

IN - org.arvados.client.api.model.argument.Filter.Operator

includeOldVersions(Boolean) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

includeTrash(Boolean) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

INSTANCE - Static variable in class org.arvados.client.api.client.factory.OkHttpClientFactory

IS_A - org.arvados.client.api.model.argument.Filter.Operator

isApiHostInsecure() - Method in interface org.arvados.client.config.ConfigProvider

isApiHostInsecure() - Method in class org.arvados.client.config.ExternalConfigProvider

isApiHostInsecure() - Method in class org.arvados.client.config.FileConfigProvider

isPreserveVersion() - Method in class org.arvados.client.api.model.CollectionReplaceFiles.CollectionOptions

Item - Class in org.arvados.client.api.model

Item() - Constructor for class org.arvados.client.api.model.Item

ItemList - Class in org.arvados.client.api.model

ItemList() - Constructor for class org.arvados.client.api.model.ItemList

J

JSON - Static variable in class org.arvados.client.api.client.BaseStandardApiClient

K

KeepClient - Class in org.arvados.client.logic.keep

KeepClient(ConfigProvider) - Constructor for class org.arvados.client.logic.keep.KeepClient

KeepLocator - Class in org.arvados.client.logic.keep

KeepLocator(String) - Constructor for class org.arvados.client.logic.keep.KeepLocator

KeepServerApiClient - Class in org.arvados.client.api.client

KeepServerApiClient(ConfigProvider) - Constructor for class org.arvados.client.api.client.KeepServerApiClient

KeepService - Class in org.arvados.client.api.model

KeepService() - Constructor for class org.arvados.client.api.model.KeepService

KeepServiceList - Class in org.arvados.client.api.model

KeepServiceList() - Constructor for class org.arvados.client.api.model.KeepServiceList

KeepServicesApiClient - Class in org.arvados.client.api.client

KeepServicesApiClient(ConfigProvider) - Constructor for class org.arvados.client.api.client.KeepServicesApiClient

KeepWebApiClient - Class in org.arvados.client.api.client

KeepWebApiClient(ConfigProvider) - Constructor for class org.arvados.client.api.client.KeepWebApiClient

keepWebHost(String) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

keepWebPort(int) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

L

LESS - org.arvados.client.api.model.argument.Filter.Operator

LESS_EQUALS - org.arvados.client.api.model.argument.Filter.Operator

LIKE - org.arvados.client.api.model.argument.Filter.Operator

limit(Integer) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

Link - Class in org.arvados.client.api.model

Link() - Constructor for class org.arvados.client.api.model.Link

LinkList - Class in org.arvados.client.api.model

LinkList() - Constructor for class org.arvados.client.api.model.LinkList

LinksApiClient - Class in org.arvados.client.api.client

LinksApiClient(ConfigProvider) - Constructor for class org.arvados.client.api.client.LinksApiClient

list() - Method in class org.arvados.client.api.client.BaseStandardApiClient

list(ListArgument) - Method in class org.arvados.client.api.client.BaseStandardApiClient

ListArgument - Class in org.arvados.client.api.model.argument

ListArgument.Count - Enum in org.arvados.client.api.model.argument

ListArgument.ListArgumentBuilder - Class in org.arvados.client.api.model.argument

listFileInfoFromCollection(String) - Method in class org.arvados.client.facade.ArvadosFacade

Lists all FileTokens (objects containing information about files) for specified collection.

listFileInfoFromCollection(String) - Method in class org.arvados.client.logic.keep.FileDownloader

LOCATOR_PATTERN - Static variable in class org.arvados.client.common.Patterns

locators(List<String>) - Method in class org.arvados.client.logic.collection.ManifestFactory.ManifestFactoryBuilder

M

ManifestDecoder - Class in org.arvados.client.logic.collection

ManifestDecoder() - Constructor for class org.arvados.client.logic.collection.ManifestDecoder

ManifestFactory - Class in org.arvados.client.logic.collection

ManifestFactory.ManifestFactoryBuilder - Class in org.arvados.client.logic.collection

manifestFiles(List<File>) - Method in class org.arvados.client.logic.collection.CollectionFactory.CollectionFactoryBuilder

manifestLocators(List<String>) - Method in class org.arvados.client.logic.collection.CollectionFactory.CollectionFactoryBuilder

ManifestStream - Class in org.arvados.client.logic.collection

ManifestStream(String, List<KeepLocator>, List<FileToken>) - Constructor for class org.arvados.client.logic.collection.ManifestStream

mapToJson(TL) - Method in class org.arvados.client.api.client.BaseStandardApiClient

merge(Collection<File>, File) - Static method in class org.arvados.client.utils.FileMerge

MORE - org.arvados.client.api.model.argument.Filter.Operator

MORE_EQUALS - org.arvados.client.api.model.argument.Filter.Operator

N

name(String) - Method in class org.arvados.client.logic.collection.CollectionFactory.CollectionFactoryBuilder

NEW_LINE - Static variable in class org.arvados.client.common.Characters

NONE - org.arvados.client.api.model.argument.ListArgument.Count

NOT_EQUALS - org.arvados.client.api.model.argument.Filter.Operator

NOT_IN - org.arvados.client.api.model.argument.Filter.Operator

numberOfCopies(int) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

numberOfRetries(int) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

O

of(String, Filter.Operator, Object) - Static method in class org.arvados.client.api.model.argument.Filter

offset(Integer) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

OkHttpClientFactory - Class in org.arvados.client.api.client.factory

OkHttpClient instance factory that builds and configures client instances sharing the common resource pool: this is the recommended approach to optimize resource usage.

order(List<String>) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

org.arvados.client.api.client - package org.arvados.client.api.client

org.arvados.client.api.client.factory - package org.arvados.client.api.client.factory

org.arvados.client.api.model - package org.arvados.client.api.model

org.arvados.client.api.model.argument - package org.arvados.client.api.model.argument

org.arvados.client.common - package org.arvados.client.common

org.arvados.client.config - package org.arvados.client.config

org.arvados.client.exception - package org.arvados.client.exception

org.arvados.client.facade - package org.arvados.client.facade

org.arvados.client.logic.collection - package org.arvados.client.logic.collection

org.arvados.client.logic.keep - package org.arvados.client.logic.keep

org.arvados.client.logic.keep.exception - package org.arvados.client.logic.keep.exception

org.arvados.client.utils - package org.arvados.client.utils

P

Patterns - Class in org.arvados.client.common

PERCENT - Static variable in class org.arvados.client.common.Characters

permissionHint() - Method in class org.arvados.client.logic.keep.KeepLocator

ProgressListener - Interface in org.arvados.client.api.client

projectUuid(String) - Method in class org.arvados.client.logic.collection.CollectionFactory.CollectionFactoryBuilder

put(File, int, int) - Method in class org.arvados.client.logic.keep.KeepClient

put(String, File) - Method in class org.arvados.client.logic.keep.FileTransferHandler

Q

QUOTE - Static variable in class org.arvados.client.common.Characters

R

readTimeout(int) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

RuntimeConstraints - Class in org.arvados.client.api.model

RuntimeConstraints() - Constructor for class org.arvados.client.api.model.RuntimeConstraints

S

select(List<String>) - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

setApi(Boolean) - Method in class org.arvados.client.api.model.RuntimeConstraints

setCollectionOptions(CollectionReplaceFiles.CollectionOptions) - Method in class org.arvados.client.api.model.CollectionReplaceFiles

setCommand(List<String>) - Method in class org.arvados.client.api.model.Group

setContainerCount(Integer) - Method in class org.arvados.client.api.model.Group

setContainerCountMax(Integer) - Method in class org.arvados.client.api.model.Group

setContainerImage(String) - Method in class org.arvados.client.api.model.Group

setContainerUuid(String) - Method in class org.arvados.client.api.model.Group

setCreatedAt(LocalDateTime) - Method in class org.arvados.client.api.model.Item

setCwd(String) - Method in class org.arvados.client.api.model.Group

setDeleteAt(LocalDateTime) - Method in class org.arvados.client.api.model.Collection

setDeleteAt(LocalDateTime) - Method in class org.arvados.client.api.model.Group

setDescription(String) - Method in class org.arvados.client.api.model.Collection

setDescription(String) - Method in class org.arvados.client.api.model.Group

setEmail(String) - Method in class org.arvados.client.api.model.User

setEnsureUniqueName(Boolean) - Method in class org.arvados.client.api.model.argument.UntrashGroup

setEnvironment(Object) - Method in class org.arvados.client.api.model.Group

setErrors(List<String>) - Method in class org.arvados.client.api.model.ApiError

setErrorToken(String) - Method in class org.arvados.client.api.model.ApiError

setEtag(String) - Method in class org.arvados.client.api.model.Item

setEtag(String) - Method in class org.arvados.client.api.model.ItemList

setExpiresAt(LocalDateTime) - Method in class org.arvados.client.api.model.Group

setFilters(List<String>) - Method in class org.arvados.client.api.model.argument.ContentsGroup

setFilters(List<String>) - Method in class org.arvados.client.api.model.Group

setFirstName(String) - Method in class org.arvados.client.api.model.User

setFullName(String) - Method in class org.arvados.client.api.model.User

setGroupClass(String) - Method in class org.arvados.client.api.model.Group

setHeadKind(String) - Method in class org.arvados.client.api.model.Link

setHeadUuid(String) - Method in class org.arvados.client.api.model.Link

setIdentityUrl(String) - Method in class org.arvados.client.api.model.User

setIsActive(Boolean) - Method in class org.arvados.client.api.model.User

setIsAdmin(Boolean) - Method in class org.arvados.client.api.model.User

setIsInvited(Boolean) - Method in class org.arvados.client.api.model.User

setIsTrashed(Boolean) - Method in class org.arvados.client.api.model.Group

setItems(List<Collection>) - Method in class org.arvados.client.api.model.CollectionList

setItems(List<Group>) - Method in class org.arvados.client.api.model.GroupList

setItems(List<KeepService>) - Method in class org.arvados.client.api.model.KeepServiceList

setItems(List<Link>) - Method in class org.arvados.client.api.model.LinkList

setItems(List<User>) - Method in class org.arvados.client.api.model.UserList

setItemsAvailable(Integer) - Method in class org.arvados.client.api.model.ItemList

setKeepCacheRam(Long) - Method in class org.arvados.client.api.model.RuntimeConstraints

setKind(String) - Method in class org.arvados.client.api.model.Item

setKind(String) - Method in class org.arvados.client.api.model.ItemList

setLastName(String) - Method in class org.arvados.client.api.model.User

setLimit(Integer) - Method in class org.arvados.client.api.model.argument.ContentsGroup

setLimit(Object) - Method in class org.arvados.client.api.model.ItemList

setLinkClass(String) - Method in class org.arvados.client.api.model.Link

setLogUuid(String) - Method in class org.arvados.client.api.model.Group

setManifestText(String) - Method in class org.arvados.client.api.model.Collection

setModifiedAt(LocalDateTime) - Method in class org.arvados.client.api.model.Item

setModifiedByClientUuid(String) - Method in class org.arvados.client.api.model.Item

setModifiedByUserUuid(String) - Method in class org.arvados.client.api.model.Item

setMounts(Object) - Method in class org.arvados.client.api.model.Group

setName(String) - Method in class org.arvados.client.api.model.Collection

setName(String) - Method in class org.arvados.client.api.model.Group

setName(String) - Method in class org.arvados.client.api.model.Link

setOffset(Object) - Method in class org.arvados.client.api.model.ItemList

setOrder(String) - Method in class org.arvados.client.api.model.argument.ContentsGroup

setOutputName(String) - Method in class org.arvados.client.api.model.Group

setOutputPath(String) - Method in class org.arvados.client.api.model.Group

setOutputTtl(Integer) - Method in class org.arvados.client.api.model.Group

setOutputUuid(String) - Method in class org.arvados.client.api.model.Group

setOwnerUuid(String) - Method in class org.arvados.client.api.model.Item

setPortableDataHash(String) - Method in class org.arvados.client.api.model.Collection

setPrefs(Object) - Method in class org.arvados.client.api.model.User

setPreserveVersion(boolean) - Method in class org.arvados.client.api.model.CollectionReplaceFiles.CollectionOptions

setPriority(Integer) - Method in class org.arvados.client.api.model.Group

setProperties(Object) - Method in class org.arvados.client.api.model.Collection

setProperties(Object) - Method in class org.arvados.client.api.model.Group

setRam(Long) - Method in class org.arvados.client.api.model.RuntimeConstraints

setReadOnly(Boolean) - Method in class org.arvados.client.api.model.KeepService

setRecursive(Boolean) - Method in class org.arvados.client.api.model.argument.ContentsGroup

setReplaceFiles(Map<String, String>) - Method in class org.arvados.client.api.model.CollectionReplaceFiles

setReplicationConfirmed(Integer) - Method in class org.arvados.client.api.model.Collection

setReplicationConfirmedAt(LocalDateTime) - Method in class org.arvados.client.api.model.Collection

setReplicationDesired(Integer) - Method in class org.arvados.client.api.model.Collection

setRequestingContainerUuid(String) - Method in class org.arvados.client.api.model.Group

setRuntimeConstraints(RuntimeConstraints) - Method in class org.arvados.client.api.model.Group

setSchedulingParameters(Object) - Method in class org.arvados.client.api.model.Group

setServiceHost(String) - Method in class org.arvados.client.api.model.KeepService

setServicePort(Integer) - Method in class org.arvados.client.api.model.KeepService

setServiceRoot(String) - Method in class org.arvados.client.api.model.KeepService

setServiceSslFlag(Boolean) - Method in class org.arvados.client.api.model.KeepService

setServiceType(String) - Method in class org.arvados.client.api.model.KeepService

setState(String) - Method in class org.arvados.client.api.model.Group

setTailKind(String) - Method in class org.arvados.client.api.model.Link

setTailUuid(String) - Method in class org.arvados.client.api.model.Link

setTrashAt(LocalDateTime) - Method in class org.arvados.client.api.model.Collection

setTrashAt(LocalDateTime) - Method in class org.arvados.client.api.model.Group

setTrashed(Boolean) - Method in class org.arvados.client.api.model.Collection

setUpdatedAt(LocalDateTime) - Method in class org.arvados.client.api.model.Item

setUseExisting(Boolean) - Method in class org.arvados.client.api.model.Group

setUsername(String) - Method in class org.arvados.client.api.model.User

setUuid(String) - Method in class org.arvados.client.api.model.argument.Argument

setUuid(String) - Method in class org.arvados.client.api.model.Item

setVcpus(Integer) - Method in class org.arvados.client.api.model.RuntimeConstraints

setWritableBy(List<String>) - Method in class org.arvados.client.api.model.Group

setWritableBy(List<String>) - Method in class org.arvados.client.api.model.User

showGroupsAccessibleByCurrentUser() - Method in class org.arvados.client.facade.ArvadosFacade

Gets uuid of current user based on api Token provided in configuration and uses it to list all projects that this user has read access to in Arvados.

showGroupsOwnedByCurrentUser() - Method in class org.arvados.client.facade.ArvadosFacade

Gets uuid of current user based on api Token provided in configuration and uses it to list all projects that this user owns in Arvados.

SLASH - Static variable in class org.arvados.client.common.Characters

SPACE - Static variable in class org.arvados.client.common.Characters

split(File, File, int) - Static method in class org.arvados.client.utils.FileSplit

stripped() - Method in class org.arvados.client.logic.keep.KeepLocator

system() - Method in class org.arvados.client.api.client.UsersApiClient

T

toString() - Method in class org.arvados.client.api.model.argument.Filter

toString() - Method in class org.arvados.client.api.model.argument.ListArgument.ListArgumentBuilder

toString() - Method in class org.arvados.client.api.model.Collection

toString() - Method in class org.arvados.client.api.model.Group

toString() - Method in class org.arvados.client.api.model.User

toString() - Method in class org.arvados.client.config.ExternalConfigProvider

toString() - Method in class org.arvados.client.logic.collection.FileToken

toString() - Method in class org.arvados.client.logic.collection.ManifestStream

toString() - Method in class org.arvados.client.logic.keep.KeepLocator

U

untrash(UntrashGroup) - Method in class org.arvados.client.api.client.GroupsApiClient

UntrashGroup - Class in org.arvados.client.api.model.argument

UntrashGroup() - Constructor for class org.arvados.client.api.model.argument.UntrashGroup

update(String, CollectionReplaceFiles) - Method in class org.arvados.client.api.client.CollectionsApiClient

update(T) - Method in class org.arvados.client.api.client.BaseStandardApiClient

updateProgress(long) - Method in interface org.arvados.client.api.client.ProgressListener

updateWithReplaceFiles(String, Map<String, String>) - Method in class org.arvados.client.facade.ArvadosFacade

Uploads multiple files to an existing collection.

upload(File) - Method in class org.arvados.client.facade.ArvadosFacade

Creates and uploads new collection containing a single file.

upload(String, File, ProgressListener) - Method in class org.arvados.client.api.client.KeepWebApiClient

upload(String, InputStream, String, ProgressListener) - Method in class org.arvados.client.api.client.KeepWebApiClient

upload(String, Map<String, String>, File) - Method in class org.arvados.client.api.client.KeepServerApiClient

upload(List<File>) - Method in class org.arvados.client.facade.ArvadosFacade

Creates and uploads new collection containing passed files.

upload(List<File>, String, String) - Method in class org.arvados.client.facade.ArvadosFacade

Uploads new collection with specified name and containing selected files to an existing project.

upload(List<File>, String, String) - Method in class org.arvados.client.logic.keep.FileUploader

uploadToExistingCollection(File, String) - Method in class org.arvados.client.facade.ArvadosFacade

Uploads a file to a specified collection.

uploadToExistingCollection(List<File>, String) - Method in class org.arvados.client.facade.ArvadosFacade

Uploads multiple files to an existing collection.

uploadToExistingCollection(List<File>, String) - Method in class org.arvados.client.logic.keep.FileUploader

User - Class in org.arvados.client.api.model

User() - Constructor for class org.arvados.client.api.model.User

USER_UUID_PATTERN - Static variable in class org.arvados.client.common.Patterns

UserList - Class in org.arvados.client.api.model

UserList() - Constructor for class org.arvados.client.api.model.UserList

UsersApiClient - Class in org.arvados.client.api.client

UsersApiClient(ConfigProvider) - Constructor for class org.arvados.client.api.client.UsersApiClient

V

valueOf(String) - Static method in enum org.arvados.client.api.model.argument.Filter.Operator

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.arvados.client.api.model.argument.ListArgument.Count

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.arvados.client.api.model.argument.Filter.Operator

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.arvados.client.api.model.argument.ListArgument.Count

Returns an array containing the constants of this enum type, in the order they are declared.

W

writeTimeout(int) - Method in class org.arvados.client.config.ExternalConfigProvider.ExternalConfigProviderBuilder

writeTo(BufferedSink) - Method in class org.arvados.client.api.client.CountingFileRequestBody

writeTo(BufferedSink) - Method in class org.arvados.client.api.client.CountingStreamRequestBody

X

X_KEEP_DESIRED_REPLICAS - Static variable in class org.arvados.client.common.Headers

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