Module arvados.api
Expand source code
# Copyright (C) The Arvados Authors. All rights reserved.
#
# SPDX-License-Identifier: Apache-2.0
from __future__ import absolute_import
from future import standard_library
standard_library.install_aliases()
from builtins import range
import collections
import http.client
import httplib2
import json
import logging
import os
import re
import socket
import ssl
import sys
import time
import types
import apiclient
from apiclient import discovery as apiclient_discovery
from apiclient import errors as apiclient_errors
from . import config
from . import errors
from . import util
from . import cache
_logger = logging.getLogger('arvados.api')
MAX_IDLE_CONNECTION_DURATION = 30
RETRY_DELAY_INITIAL = 2
RETRY_DELAY_BACKOFF = 2
RETRY_COUNT = 2
if sys.version_info >= (3,):
httplib2.SSLHandshakeError = None
class OrderedJsonModel(apiclient.model.JsonModel):
"""Model class for JSON that preserves the contents' order.
API clients that care about preserving the order of fields in API
server responses can use this model to do so, like this::
from arvados.api import OrderedJsonModel
client = arvados.api('v1', ..., model=OrderedJsonModel())
"""
def deserialize(self, content):
# This is a very slightly modified version of the parent class'
# implementation. Copyright (c) 2010 Google.
content = content.decode('utf-8')
body = json.loads(content, object_pairs_hook=collections.OrderedDict)
if self._data_wrapper and isinstance(body, dict) and 'data' in body:
body = body['data']
return body
def _intercept_http_request(self, uri, method="GET", headers={}, **kwargs):
if not headers.get('X-Request-Id'):
headers['X-Request-Id'] = self._request_id()
try:
if (self.max_request_size and
kwargs.get('body') and
self.max_request_size < len(kwargs['body'])):
raise apiclient_errors.MediaUploadSizeError("Request size %i bytes exceeds published limit of %i bytes" % (len(kwargs['body']), self.max_request_size))
if config.get("ARVADOS_EXTERNAL_CLIENT", "") == "true":
headers['X-External-Client'] = '1'
headers['Authorization'] = 'OAuth2 %s' % self.arvados_api_token
retryable = method in [
'DELETE', 'GET', 'HEAD', 'OPTIONS', 'PUT']
retry_count = self._retry_count if retryable else 0
if (not retryable and
time.time() - self._last_request_time > self._max_keepalive_idle):
# High probability of failure due to connection atrophy. Make
# sure this request [re]opens a new connection by closing and
# forgetting all cached connections first.
for conn in self.connections.values():
conn.close()
self.connections.clear()
delay = self._retry_delay_initial
for _ in range(retry_count):
self._last_request_time = time.time()
try:
return self.orig_http_request(uri, method, headers=headers, **kwargs)
except http.client.HTTPException:
_logger.debug("[%s] Retrying API request in %d s after HTTP error",
headers['X-Request-Id'], delay, exc_info=True)
except ssl.SSLCertVerificationError as e:
raise ssl.SSLCertVerificationError(e.args[0], "Could not connect to %s\n%s\nPossible causes: remote SSL/TLS certificate expired, or was issued by an untrusted certificate authority." % (uri, e)) from None
except socket.error:
# This is the one case where httplib2 doesn't close the
# underlying connection first. Close all open
# connections, expecting this object only has the one
# connection to the API server. This is safe because
# httplib2 reopens connections when needed.
_logger.debug("[%s] Retrying API request in %d s after socket error",
headers['X-Request-Id'], delay, exc_info=True)
for conn in self.connections.values():
conn.close()
time.sleep(delay)
delay = delay * self._retry_delay_backoff
self._last_request_time = time.time()
return self.orig_http_request(uri, method, headers=headers, **kwargs)
except Exception as e:
# Prepend "[request_id] " to the error message, which we
# assume is the first string argument passed to the exception
# constructor.
for i in range(len(e.args or ())):
if type(e.args[i]) == type(""):
e.args = e.args[:i] + ("[{}] {}".format(headers['X-Request-Id'], e.args[i]),) + e.args[i+1:]
raise type(e)(*e.args)
raise
def _patch_http_request(http, api_token):
http.arvados_api_token = api_token
http.max_request_size = 0
http.orig_http_request = http.request
http.request = types.MethodType(_intercept_http_request, http)
http._last_request_time = 0
http._max_keepalive_idle = MAX_IDLE_CONNECTION_DURATION
http._retry_delay_initial = RETRY_DELAY_INITIAL
http._retry_delay_backoff = RETRY_DELAY_BACKOFF
http._retry_count = RETRY_COUNT
http._request_id = util.new_request_id
return http
def _close_connections(self):
for conn in self._http.connections.values():
conn.close()
# Monkey patch discovery._cast() so objects and arrays get serialized
# with json.dumps() instead of str().
_cast_orig = apiclient_discovery._cast
def _cast_objects_too(value, schema_type):
global _cast_orig
if (type(value) != type('') and
type(value) != type(b'') and
(schema_type == 'object' or schema_type == 'array')):
return json.dumps(value)
else:
return _cast_orig(value, schema_type)
apiclient_discovery._cast = _cast_objects_too
# Convert apiclient's HttpErrors into our own API error subclass for better
# error reporting.
# Reassigning apiclient_errors.HttpError is not sufficient because most of the
# apiclient submodules import the class into their own namespace.
def _new_http_error(cls, *args, **kwargs):
return super(apiclient_errors.HttpError, cls).__new__(
errors.ApiError, *args, **kwargs)
apiclient_errors.HttpError.__new__ = staticmethod(_new_http_error)
def http_cache(data_type):
homedir = os.environ.get('HOME')
if not homedir or len(homedir) == 0:
return None
path = homedir + '/.cache/arvados/' + data_type
try:
util.mkdir_dash_p(path)
except OSError:
return None
return cache.SafeHTTPCache(path, max_age=60*60*24*2)
def api(version=None, cache=True, host=None, token=None, insecure=False,
request_id=None, timeout=5*60, **kwargs):
"""Return an apiclient Resources object for an Arvados instance.
:version:
A string naming the version of the Arvados API to use (for
example, 'v1').
:cache:
Use a cache (~/.cache/arvados/discovery) for the discovery
document.
:host:
The Arvados API server host (and optional :port) to connect to.
:token:
The authentication token to send with each API call.
:insecure:
If True, ignore SSL certificate validation errors.
:timeout:
A timeout value for http requests.
:request_id:
Default X-Request-Id header value for outgoing requests that
don't already provide one. If None or omitted, generate a random
ID. When retrying failed requests, the same ID is used on all
attempts.
Additional keyword arguments will be passed directly to
`apiclient_discovery.build` if a new Resource object is created.
If the `discoveryServiceUrl` or `http` keyword arguments are
missing, this function will set default values for them, based on
the current Arvados configuration settings.
"""
if not version:
version = 'v1'
_logger.info("Using default API version. " +
"Call arvados.api('%s') instead." %
version)
if 'discoveryServiceUrl' in kwargs:
if host:
raise ValueError("both discoveryServiceUrl and host provided")
# Here we can't use a token from environment, config file,
# etc. Those probably have nothing to do with the host
# provided by the caller.
if not token:
raise ValueError("discoveryServiceUrl provided, but token missing")
elif host and token:
pass
elif not host and not token:
return api_from_config(
version=version, cache=cache, timeout=timeout,
request_id=request_id, **kwargs)
else:
# Caller provided one but not the other
if not host:
raise ValueError("token argument provided, but host missing.")
else:
raise ValueError("host argument provided, but token missing.")
if host:
# Caller wants us to build the discoveryServiceUrl
kwargs['discoveryServiceUrl'] = (
'https://%s/discovery/v1/apis/{api}/{apiVersion}/rest' % (host,))
if 'http' not in kwargs:
http_kwargs = {'ca_certs': util.ca_certs_path()}
if cache:
http_kwargs['cache'] = http_cache('discovery')
if insecure:
http_kwargs['disable_ssl_certificate_validation'] = True
kwargs['http'] = httplib2.Http(**http_kwargs)
if kwargs['http'].timeout is None:
kwargs['http'].timeout = timeout
kwargs['http'] = _patch_http_request(kwargs['http'], token)
svc = apiclient_discovery.build('arvados', version, cache_discovery=False, **kwargs)
svc.api_token = token
svc.insecure = insecure
svc.request_id = request_id
svc.config = lambda: util.get_config_once(svc)
svc.vocabulary = lambda: util.get_vocabulary_once(svc)
svc.close_connections = types.MethodType(_close_connections, svc)
kwargs['http'].max_request_size = svc._rootDesc.get('maxRequestSize', 0)
kwargs['http'].cache = None
kwargs['http']._request_id = lambda: svc.request_id or util.new_request_id()
return svc
def api_from_config(version=None, apiconfig=None, **kwargs):
"""Return an apiclient Resources object enabling access to an Arvados server
instance.
:version:
A string naming the version of the Arvados REST API to use (for
example, 'v1').
:apiconfig:
If provided, this should be a dict-like object (must support the get()
method) with entries for ARVADOS_API_HOST, ARVADOS_API_TOKEN, and
optionally ARVADOS_API_HOST_INSECURE. If not provided, use
arvados.config (which gets these parameters from the environment by
default.)
Other keyword arguments such as `cache` will be passed along `api()`
"""
# Load from user configuration or environment
if apiconfig is None:
apiconfig = config.settings()
errors = []
for x in ['ARVADOS_API_HOST', 'ARVADOS_API_TOKEN']:
if x not in apiconfig:
errors.append(x)
if errors:
raise ValueError(" and ".join(errors)+" not set.\nPlease set in %s or export environment variable." % config.default_config_file)
host = apiconfig.get('ARVADOS_API_HOST')
token = apiconfig.get('ARVADOS_API_TOKEN')
insecure = config.flag_is_true('ARVADOS_API_HOST_INSECURE', apiconfig)
return api(version=version, host=host, token=token, insecure=insecure, **kwargs)
Functions
def api(version=None, cache=True, host=None, token=None, insecure=False, request_id=None, timeout=300, **kwargs)
-
Return an apiclient Resources object for an Arvados instance.
:version: A string naming the version of the Arvados API to use (for example, 'v1').
:cache: Use a cache (~/.cache/arvados/discovery) for the discovery document.
:host: The Arvados API server host (and optional :port) to connect to.
:token: The authentication token to send with each API call.
:insecure: If True, ignore SSL certificate validation errors.
:timeout: A timeout value for http requests.
:request_id: Default X-Request-Id header value for outgoing requests that don't already provide one. If None or omitted, generate a random ID. When retrying failed requests, the same ID is used on all attempts.
Additional keyword arguments will be passed directly to
apiclient_discovery.build
if a new Resource object is created. If thediscoveryServiceUrl
orhttp
keyword arguments are missing, this function will set default values for them, based on the current Arvados configuration settings.Expand source code
def api(version=None, cache=True, host=None, token=None, insecure=False, request_id=None, timeout=5*60, **kwargs): """Return an apiclient Resources object for an Arvados instance. :version: A string naming the version of the Arvados API to use (for example, 'v1'). :cache: Use a cache (~/.cache/arvados/discovery) for the discovery document. :host: The Arvados API server host (and optional :port) to connect to. :token: The authentication token to send with each API call. :insecure: If True, ignore SSL certificate validation errors. :timeout: A timeout value for http requests. :request_id: Default X-Request-Id header value for outgoing requests that don't already provide one. If None or omitted, generate a random ID. When retrying failed requests, the same ID is used on all attempts. Additional keyword arguments will be passed directly to `apiclient_discovery.build` if a new Resource object is created. If the `discoveryServiceUrl` or `http` keyword arguments are missing, this function will set default values for them, based on the current Arvados configuration settings. """ if not version: version = 'v1' _logger.info("Using default API version. " + "Call arvados.api('%s') instead." % version) if 'discoveryServiceUrl' in kwargs: if host: raise ValueError("both discoveryServiceUrl and host provided") # Here we can't use a token from environment, config file, # etc. Those probably have nothing to do with the host # provided by the caller. if not token: raise ValueError("discoveryServiceUrl provided, but token missing") elif host and token: pass elif not host and not token: return api_from_config( version=version, cache=cache, timeout=timeout, request_id=request_id, **kwargs) else: # Caller provided one but not the other if not host: raise ValueError("token argument provided, but host missing.") else: raise ValueError("host argument provided, but token missing.") if host: # Caller wants us to build the discoveryServiceUrl kwargs['discoveryServiceUrl'] = ( 'https://%s/discovery/v1/apis/{api}/{apiVersion}/rest' % (host,)) if 'http' not in kwargs: http_kwargs = {'ca_certs': util.ca_certs_path()} if cache: http_kwargs['cache'] = http_cache('discovery') if insecure: http_kwargs['disable_ssl_certificate_validation'] = True kwargs['http'] = httplib2.Http(**http_kwargs) if kwargs['http'].timeout is None: kwargs['http'].timeout = timeout kwargs['http'] = _patch_http_request(kwargs['http'], token) svc = apiclient_discovery.build('arvados', version, cache_discovery=False, **kwargs) svc.api_token = token svc.insecure = insecure svc.request_id = request_id svc.config = lambda: util.get_config_once(svc) svc.vocabulary = lambda: util.get_vocabulary_once(svc) svc.close_connections = types.MethodType(_close_connections, svc) kwargs['http'].max_request_size = svc._rootDesc.get('maxRequestSize', 0) kwargs['http'].cache = None kwargs['http']._request_id = lambda: svc.request_id or util.new_request_id() return svc
def api_from_config(version=None, apiconfig=None, **kwargs)
-
Return an apiclient Resources object enabling access to an Arvados server instance.
:version: A string naming the version of the Arvados REST API to use (for example, 'v1').
:apiconfig: If provided, this should be a dict-like object (must support the get() method) with entries for ARVADOS_API_HOST, ARVADOS_API_TOKEN, and optionally ARVADOS_API_HOST_INSECURE. If not provided, use arvados.config (which gets these parameters from the environment by default.)
Other keyword arguments such as
cache
will be passed alongapi()
Expand source code
def api_from_config(version=None, apiconfig=None, **kwargs): """Return an apiclient Resources object enabling access to an Arvados server instance. :version: A string naming the version of the Arvados REST API to use (for example, 'v1'). :apiconfig: If provided, this should be a dict-like object (must support the get() method) with entries for ARVADOS_API_HOST, ARVADOS_API_TOKEN, and optionally ARVADOS_API_HOST_INSECURE. If not provided, use arvados.config (which gets these parameters from the environment by default.) Other keyword arguments such as `cache` will be passed along `api()` """ # Load from user configuration or environment if apiconfig is None: apiconfig = config.settings() errors = [] for x in ['ARVADOS_API_HOST', 'ARVADOS_API_TOKEN']: if x not in apiconfig: errors.append(x) if errors: raise ValueError(" and ".join(errors)+" not set.\nPlease set in %s or export environment variable." % config.default_config_file) host = apiconfig.get('ARVADOS_API_HOST') token = apiconfig.get('ARVADOS_API_TOKEN') insecure = config.flag_is_true('ARVADOS_API_HOST_INSECURE', apiconfig) return api(version=version, host=host, token=token, insecure=insecure, **kwargs)
def http_cache(data_type)
-
Expand source code
def http_cache(data_type): homedir = os.environ.get('HOME') if not homedir or len(homedir) == 0: return None path = homedir + '/.cache/arvados/' + data_type try: util.mkdir_dash_p(path) except OSError: return None return cache.SafeHTTPCache(path, max_age=60*60*24*2)
Classes
class OrderedJsonModel (data_wrapper=False)
-
Model class for JSON that preserves the contents' order.
API clients that care about preserving the order of fields in API server responses can use this model to do so, like this::
from arvados.api import OrderedJsonModel client = arvados.api('v1', ..., model=OrderedJsonModel())
Construct a JsonModel.
Args
data_wrapper
- boolean, wrap requests and responses in a data wrapper
Expand source code
class OrderedJsonModel(apiclient.model.JsonModel): """Model class for JSON that preserves the contents' order. API clients that care about preserving the order of fields in API server responses can use this model to do so, like this:: from arvados.api import OrderedJsonModel client = arvados.api('v1', ..., model=OrderedJsonModel()) """ def deserialize(self, content): # This is a very slightly modified version of the parent class' # implementation. Copyright (c) 2010 Google. content = content.decode('utf-8') body = json.loads(content, object_pairs_hook=collections.OrderedDict) if self._data_wrapper and isinstance(body, dict) and 'data' in body: body = body['data'] return body
Ancestors
- googleapiclient.model.JsonModel
- googleapiclient.model.BaseModel
- googleapiclient.model.Model
Methods
def deserialize(self, content)
-
Perform the actual deserialization from response string to Python object.
Args
content
- string, the body of the HTTP response
Returns
The body de-serialized as a Python object.
Expand source code
def deserialize(self, content): # This is a very slightly modified version of the parent class' # implementation. Copyright (c) 2010 Google. content = content.decode('utf-8') body = json.loads(content, object_pairs_hook=collections.OrderedDict) if self._data_wrapper and isinstance(body, dict) and 'data' in body: body = body['data'] return body