| Arvados | R Documentation |
Arvados class gives users ability to access Arvados REST API.
arv = Arvados$new(authToken = NULL, hostName = NULL, numRetries = 0)
Authentification token. If not specified ARVADOS_API_TOKEN environment variable will be used.
Host name. If not specified ARVADOS_API_HOST environment variable will be used.
Number which specifies how many times to retry failed service requests.
api_client_authorizations.create
api_client_authorizations.create_system_auth
api_client_authorizations.current
api_client_authorizations.delete
api_client_authorizations.get
api_client_authorizations.list
api_client_authorizations.update
api_clients.create
api_clients.delete
api_clients.get
api_clients.list
api_clients.update
authorized_keys.create
authorized_keys.delete
authorized_keys.get
authorized_keys.list
authorized_keys.update
collections.create
collections.delete
collections.get
collections.list
collections.provenance
collections.trash
collections.untrash
collections.update
collections.used_by
container_requests.create
container_requests.delete
container_requests.get
container_requests.list
container_requests.update
containers.auth
containers.create
containers.current
containers.delete
containers.get
containers.list
containers.lock
containers.secret_mounts
containers.unlock
containers.update
groups.contents
groups.create
groups.delete
groups.get
groups.list
groups.trash
groups.untrash
groups.update
humans.create
humans.delete
humans.get
humans.list
humans.update
jobs.cancel
jobs.create
jobs.delete
jobs.get
jobs.list
jobs.lock
jobs.queue
jobs.queue_size
jobs.update
job_tasks.create
job_tasks.delete
job_tasks.get
job_tasks.list
job_tasks.update
keep_disks.create
keep_disks.delete
keep_disks.get
keep_disks.list
keep_disks.ping
keep_disks.update
keep_services.accessible
keep_services.create
keep_services.delete
keep_services.get
keep_services.list
keep_services.update
links.create
links.delete
links.get
links.get_permissions
links.list
links.update
logs.create
logs.delete
logs.get
logs.list
logs.update
nodes.create
nodes.delete
nodes.get
nodes.list
nodes.ping
nodes.update
pipeline_instances.cancel
pipeline_instances.create
pipeline_instances.delete
pipeline_instances.get
pipeline_instances.list
pipeline_instances.update
pipeline_templates.create
pipeline_templates.delete
pipeline_templates.get
pipeline_templates.list
pipeline_templates.update
projects.create
projects.delete
projects.get
projects.list
projects.update
repositories.create
repositories.delete
repositories.get
repositories.get_all_permissions
repositories.list
repositories.update
specimens.create
specimens.delete
specimens.get
specimens.list
specimens.update
traits.create
traits.delete
traits.get
traits.list
traits.update
user_agreements.create
user_agreements.delete
user_agreements.get
user_agreements.list
user_agreements.new
user_agreements.sign
user_agreements.signatures
user_agreements.update
users.activate
users.create
users.current
users.delete
users.get
users.list
users.merge
users.setup
users.system
users.unsetup
users.update
users.update_uuid
virtual_machines.create
virtual_machines.delete
virtual_machines.get
virtual_machines.get_all_logins
virtual_machines.list
virtual_machines.logins
virtual_machines.update
workflows.create
workflows.delete
workflows.get
workflows.list
workflows.update
## Not run:
arv <- Arvados$new("your Arvados token", "example.arvadosapi.com")
collection <- arv$collections.get("uuid")
collectionList <- arv$collections.list(list(list("name", "like", "Test%")))
collectionList <- listAll(arv$collections.list, list(list("name", "like", "Test%")))
deletedCollection <- arv$collections.delete("uuid")
updatedCollection <- arv$collections.update(list(name = "New name", description = "New description"),
"uuid")
createdCollection <- arv$collections.create(list(name = "Example",
description = "This is a test collection"))
## End(Not run)